PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29598.m000445
Common NameRCOM_0484320
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family WRKY
Protein Properties Length: 263aa    MW: 29958 Da    PI: 10.0258
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29598.m000445genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.45.3e-32196253359
                    -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp+++++tYegeHnh+
  29598.m000445 196 DEYSWRKYGQKPIKGSPHPRGYYKCSSLrGCPARKHVERCLEDPSMLIVTYEGEHNHS 253
                    9*************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105336.2E-18147192IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.1E-34182253IPR003657WRKY domain
PROSITE profilePS5081129.964189255IPR003657WRKY domain
SuperFamilySSF1182901.7E-27192253IPR003657WRKY domain
SMARTSM007747.7E-39194254IPR003657WRKY domain
PfamPF031061.9E-27196252IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MEEVEEANKA AVESCRRVIA LLCQPRDQVQ ARNLVTETGE TVSKFKRVIS QIKPTQQYQF  60
LQQQQQIQRM QFQQQQQMKY QADMMYSRSN SGINLKFDGS TCTPAMSTTR SFISSLSMDG  120
TVTNFDRDSF HLIGVPQSSD QISQQTRRRC SVRGEDGSVK CASSGKCHCS KRRKLRVKRS  180
IKVPAISNKV ADIPPDEYSW RKYGQKPIKG SPHPRGYYKC SSLRGCPARK HVERCLEDPS  240
MLIVTYEGEH NHSRLLSTQS AHT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-211902521071WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8276200.0KT827620.1 Manihot esculenta WRKY transcription factor 45 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015582155.11e-138PREDICTED: LOW QUALITY PROTEIN: probable WRKY transcription factor 39
SwissprotQ93WU62e-99WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBLB9SZ540.0B9SZ54_RICCO; WRKY transcription factor, putative
STRINGPOPTR_0013s03990.11e-127(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26373479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.18e-99WRKY DNA-binding protein 74